Table 1 Comparison of N-linked glycoproteins identified in whole saliva using the Zhang method and the Sun method

IPI00002818

Splice isoform 1 of kallikrein 11

CAN*ITIIEHQK

No

Yes (35)

–

0

IPI00003351

Extracellular matrix protein 1

HIPGLIHN*MTAR

No

Yes (43)

–

0

IPI00004573

Polymeric-immunoglobulin receptor

VPGN*VTAVLGETLK

Yes (101)

Yes (113)

18

3

WNN*TGCQALPSQDEGPSK

Yes (72)

Yes (62)

IIEGEPNLKVPGN*VTAVLGETLK

Yes (49)

Yes (112)

LSLLEEPGN*GTFTVILNQLTSR

Yes (60)

Yes (99)

ANLTNFPEN*GTFVVNIAQLSQDDSGR

Yes (70)

Yes (108)

QIGLYPVLVIDSSGYVNPN*YTGR

Yes (95)

Yes (112)

VPGN*VTAVLGETLKVPCHFPCK

No

Yes (50)

IPI00007244

Myeloperoxidase

SCPACPGSN*ITIR

Yes (46)

No

2

–

SYN*DSVDPR

Yes (41)

No

IPI00011229

Cathepsin D

GSLSYLN*VTR

No

Yes (49)

–

0

IPI00855918

Mucin 5, subtype B, tracheobronchial

VVLLDPKPVAN*VTCVNK

Yes (60)

Yes (80)

37

0

AQGLVLEASN*GSVLINGQR

Yes (118)

Yes (120)

GN*CTYVLMR

Yes (32)

Yes (39)

AFGQFFSPGEVIYN*K

No

Yes (72)

AFGQFFSPGEVIYN*KTDR

Yes (49)

Yes (72)

DIECQAESFPN*WTLAQVGQK

Yes (82)

Yes (86)

QVNETWTLEN*CTVAR

Yes (47)

Yes (67)

LDGPTEQCPDPLPLPAGN*CTDEEGICHR

Yes (65)

Yes (30)

FGN*LSLYLDNHYCTASATAAAAR

Yes (49)

No

LPYSLFHN*NTEGQCGTCTNNQR

Yes (32)

No

IPI00012887

Cathepsin L

YSVAN*DTGFVDIPK

No

Yes (57)

–

0

IPI00013972

Carcinoembryonic antigen-related cell adhesion molecule 8

LFIPN*ITTK

Yes (47)

No

0

–

IPI00019943

Afamin

DIENFN*STQK

Yes (41)

No

0

–

IPI00020091

Alpha-1-acid glycoprotein 2

QNQCFYN*SSYLNVQR

Yes (90)

No

0

–

IPI00020487

Extracellular glycoprotein lacritin

QFIEN*GSEFAQK

Yes (32)

No

1

–

IPI00020986

Lumican

LHINHNN*LTESVGPLPK

No

Yes (59)

–

0

IPI00021891

Splice Isoform 1 of Fibrinogen gamma chain

DLQSLEDILHQVEN*K

No

Yes (58)

–

0

VDKDLQSLEDILHQVEN*K

No

Yes (70)

IPI00022395

Complement component C9

AVN*ITSENLIDDVVSLIR

No

Yes (56)

–

0

IPI00022417

Leucine-rich alpha-2-glycoprotein

KLPPGLLAN*FTLLR

Yes (62)

Yes (72)

1

0

IPI00022429

Alpha-1-acid glycoprotein 1

QDQCIYN*TTYLNVQR

Yes (105)

No

0

–

IPI00022431

Alpha-2-HS-glycoprotein

AALAAFNAQNN*GSNFQLEEISR

Yes (64)

Yes (26)

1

–

VCQDCPLLAPLN*DTR

Yes (40)

No

IPI00022463

Serotransferrin

CGLVPVLAENYN*K

No

Yes (69)

9

0

QQQHLFGSN*VTDCSGNFCLFR

Yes (62)

No

IPI00022488

Hemopexin

ALPQPQN*VTSLLGCTH

Yes (56)

Yes (58)

1

0

SWPAVGN*CSSALR

Yes (47)

No

IPI00022974

Prolactin inducible protein

TFYWDFYTN*R

Yes (50)

No

5

–

IPI00023673

Galectin-3 binding protein

ALGFEN*ATQALGR

Yes (83)

Yes (80)

2

0

AAIPSALDTN*SSK

Yes (64)

Yes (70)

GLN*LTEDTYKPR

No

Yes (49)

EPGSN*VTMSVDAECVPMVR

No

Yes (41)

TVIRPFYLTN*SSGVD

Yes (57)

No

YKGLN*LTEDTYKPR

Yes (50)

No

IPI00025023

Lactoperoxidase

KPSPCEFIN*TTAR

Yes (34)

Yes (53)

8

0

IVGYLNEEGVLDQN*R

Yes (77)

Yes (89)

LRN*LSSPLGLMAVNQEVSDHGLPYLPYDSK

No

Yes (51)

IPI00025753

Desmoglein 1

TGEIN*ITSIVDR

Yes (36)

No

0

–

IPI00025846

Splice isoform 1 of desmocollin-2

NGIYN*ITVLASDQGGR

No

Yes (88)

1

0

AN*YTILK

Yes (49)

Yes (48)

AN*YTILKGNENGNFK

Yes (26)

No

LKAIN*DTAAR

Yes (31)

No

IPI00027412

Carcinoembryonic antigen-related cell adhesion molecule 6

LQLSNGN*MTLTLLSVK

Yes (63)

No

0

–

IPI00027486

Carcinoembryonic antigen-related cell adhesion molecule 5

TLTLFN*VTR

Yes (42)

No

0

–

IPI00031019

Cystatin-related epididymal spermatogenic protein

KLKPVN*ASNANVK

Yes (43)

No

–

–

IPI00031121

Carboxypeptidase E

DLQGNPIAN*ATISVEGIDHDVTSAK

No

Yes (69)

–

0

GN*ETIVNLIHSTR

No

Yes (43)

IPI00031547

Desmoglein 3

NTGDIN*ITAIVDR

No

Yes (80)

0

0

LPAVWSITTLN*ATSALLR

Yes (39)

No

DSTFIVN*K

Yes (45)

No

IPI00032258

Complement C4

GLN*VTLSSTGR

Yes (59)

Yes (56)

0

0

IPI00032292

Metalloproteinase inhibitor 1

FVGTPEVN*QTTLYQR

Yes (88)

Yes (101)

2

–

SHN*RSEEFLIAGK

Yes (29)

No

IPI00060143

Protein FAM3D

GLNIALVN*GTTGAVLGQK

Yes (56)

Yes (83)

0

0

IPI00166729

Alpha-2-glycoprotein 1, zinc

DIVEYYNDSN*GSHVLQGR

Yes (91)

Yes (102)

13

0

FGCEIENN*R

Yes (57)

No

FGCEIENN*RSSGAFWK

Yes (58)

No

IPI00171411

Golgi membrane protein 1

AVLVNN*ITTGER

Yes (80)

Yes (68)

1

0

LQQDVLQFQKN*QTNLER

No

Yes (56)

IPI00178926

Immunoglobulin J chain

EN*ISDPTSPLR

Yes (55)

Yes (75)

6

0

IIVPLNNREN*ISDPTSPLR

Yes (56)

Yes (68)

IPI00218460

Isoform 3 of attractin

IDSTGN*VTNELR

No

Yes (59)

–

0

IPI00242956

Fc fragment of IgG binding protein

VVTVAALGTN*ISIHKDEIGK

No

Yes (53)

11

1

VITVQVAN*FTLR

Yes (58)

Yes (50)

VTVRPGESVMVN*ISAK

No

Yes (54)

KVTVRPGESVMVN*ISAK

No

Yes (34)

YLPVN*SSLLTSDCSER

Yes (98)

Yes (46)

IPI00291410

Isoform 1 of long palate, lung, and nasal epithelium carcinoma-associated protein 1

DHN*ATSILQQLPLLSAMR

No

Yes (87)

–

0

GDQLILNLNN*ISSDR

No

Yes (87)

IPI00291488

Splice isoform of WAP four-disulfile core domain protein 2

TGVCPELQADQN*CTQECVSDSECADNLK

Yes (94)

No

0

–

IPI00295105

Carbonic anhydrase VI

LENSLLDHRN*K

No

Yes (38)

–

0

IPI00296099

Thrombospondin 1

VVN*STTGPGEHLR

Yes (44)

No

0

–

IPI00296654

Bactericidal permeability-increasing protein-like 1

LGATPVAMLHTNN*ATLR

Yes (39)

Yes (71)

5

0

LLAAAN*FTFK

Yes (64)

Yes (66)

SDDNLLN*TSALGR

Yes (81)

No

IPI00297910

Tumor-associated calcium signal transducer 2

HRPTAGAFN*HSDLDAELR

No

Yes (34)

–

0

IPI00298082

Calcium-activated chloride channel protein 2

DSFDDALQVN*TTDLSPK

Yes (38)

No

0

–

IPI00298237

Tripeptidyl-peptidase I

FLSSSPHLPPSSYFN*ASGR

No

Yes (65)

–

0

IPI00298828

Beta-2-glycoprotein I

VYKPSAGN*NSLYR

Yes (40)

Yes (74)

0

0

IPI00299547

Neutrophil gelatinase-associated lipocalin

EDKSYN*VTSVLFR

Yes (28)

No

3

SYN*VTSVLFR

Yes (55)

No

IPI00299729

Transcobalamin I

ADEGSLKN*ISIYTK

Yes (50)

Yes (51)

3

0

MN*DTIFGFTMEER

Yes (32)

Yes (81)

AQKMN*DTIFGFTMEER

Yes (49)

No

IPI00300786

Alpha-amylase, salivary

NVVDGQPFTNWYDN*GSNQVAFGR

Yes (108)

Yes (129)

16

9

IPI00304557

Short palate, lung, and nasal epithelium carcinoma associated protein 2

AEPIDDGKGLN*LSFPVTAN*VTVAGPIIGQIINLK

Yes (55)

No

0

–

GLNLSFPVTAN*VTVAGPIIGQIINLK

Yes (53)

No

IPI00328960

Similar to carcinoembryonic antigen-related cell adhesion molecule 1

FVTAGSN*VTLR

No

Yes (31)

–

0

IPI00553177

Alpha-1-antitrypsin

YLGN*ATAIFFLPDEGK

No

Yes (100)

–

0

IPI00328960

Predicted: hypothetical protein XP_085831

TPASN*ISTQVSHTK

Yes (44)

No

0

–

IPI00333140

Delta notch-like EGF repeat containing transmembrane

LVSFEVPQN*TSVK

Yes (43)

Yes (40)

1

–

IPI00335356

IGHM protein

GLTFQQN*ASSMCVPDQDTAIR

No

Yes (40)

–

0

IPI00374315

Uncharacterized protein C6orf58

IILN*QTAR

Yes (52)

Yes (5)

1

0

MGMYKIILN*QTAR

Yes (72)

Yes (63)

IPI00419215

Alpha-2-macroglobulin-like protein 1

LGHIN*FTISTK

No

Yes (35)

–

0

IPI00641229

Ig alpha-2 chain C region

LAGKPTHVN*VSVVMAEVDGTCY

Yes (56)

Yes (97)

9

1

LSLHRPALEDLLLGSEAN*LTCTLTGLR

No

Yes (109)

TPLTAN*ITK

Yes (57)

No

IPI00400826

Clusterin

LAN*LTQGEDQYYLR

Yes (64)

Yes (88)

0

0

IPI00418512

DMBT1

LVNLN*SSYGLCAGR

Yes (95)

Yes (89)

3

0

QADN*DTIDYSNFLTAAVSGGIIK

Yes (110)

Yes (112)

CSGN*ESYLWSCPHK

Yes (38)

No

IPI00431645

HP protein

NLFLN*HSEN*ATAK

Yes (59)

Yes (63)

3

0

VVLHPN*YSQVDIGLIK

No

Yes (74)

MVSHHN*LTTGATLINEQWLLTTAK

No

Yes (68)

IPI00168728

FLJ00385 protein (fragment)

EEQFN*STFR

No

Yes (51)

–

0

IPI00550991

Alpha-1-antichymotrypsin

FN*LTETSEAEIHQSFQHLLR

No

Yes (52)

–

0