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Table 3 N-linked glycoprotein changes in the plasma of HIV + and HIV - patients and their changed levels in T cells with HIV latent infection

From: Glycoproteomic analysis identifies human glycoproteins secreted from HIV latently infected T cells and reveals their presence in HIV+ plasma

IPI ID

Protein name

Individual analysis (HIV+/HIV-)

Medium (ACH-2/A3.01)

Unique peptide #

Fold change

P-value

Unique peptide #

Fold change

P-value

IPI00759642

Scavenger receptor cysteine-rich type 1 protein M130

3

4.7

2.E-03

-

-

-

IPI00029756

Tyrosine-protein kinase Mer

2

3.8

2.E-02

-

-

-

IPI00008494

Intercellular adhesion molecule 1

3

3.0

1.E-02

2

NS

NS

IPI00023814

Neogenin

4

2.9

3.E-03

2

3.2

1.E-02

IPI00009477

Intercellular adhesion molecule 2

5

2.9

2.E-06

5

NS

NS

IPI00242956

IgGFc-binding protein

12

2.9

1.E-07

-

-

-

IPI00017841

Noelin

4

2.9

4.E-02

-

-

-

IPI00004573

Polymeric immunoglobulin receptor

6

2.8

2.E-03

-

-

-

IPI00011229

Cathepsin D

1

2.8

6.E-03

2

NS

NS

IPI00290328

Receptor-type tyrosine-protein phosphatase eta

3

2.7

5.E-03

1

NS

NS

IPI00290856

Lymphatic vessel endothelial hyaluronic acid receptor 1

2

2.7

1.E-02

-

-

-

IPI00437186

Probable G-protein coupled receptor 116

4

2.6

1.E-02

-

-

-

IPI00166392

Cell adhesion molecule 1

3

2.5

2.E-02

-

-

-

IPI00015102

CD166 antigen

1

2.5

3.E-03

4

NS

NS

IPI00297124

Interleukin-6 receptor subunit beta

1

2.4

3.E-02

2

NS

NS

IPI00303071

Adenosine deaminase CECR1

2

2.4

1.E-02

2

3.8

3.E-02

IPI00023673

Galectin-3-binding protein

7

2.3

3.E-07

6

44.5

4.E-03

IPI00218795

L-selectin

3

2.2

1.E-02

2

3.2

3.E-02

IPI00643034

Phospholipid transfer protein

4

2.1

2.E-03

3

5.9

5.E-02

IPI00018136

Vascular cell adhesion protein 1

4

2.0

2.E-02

-

-

-

IPI00478003

Alpha-2-macroglobulin

6

2.0

3.E-03

-

-

-

IPI00297263

Protein HEG homolog 1

2

1.9

2.E-02

-

-

-

IPI00889740

Fibulin 1

2

1.9

4.E-02

-

-

-

IPI00023014

Von Willebrand factor

9

1.8

3.E-02

-

-

-

IPI00896380

Ig mu chain C region

5

1.7

5.E-02

-

-

-

IPI00020986

Lumican

5

1.7

2.E-02

-

-

-

IPI00414888

ICOS ligand

3

1.7

5.E-02

2

2.6

1.E-02

IPI00022462

Transferrin receptor protein 1

3

1.6

3.E-04

4

NS

NS

IPI00973474

Ig gamma-3 chain C region

2

1.6

2.E-02

-

-

-

IPI00009521

Macrophage receptor MARCO

1

1.5

4.E-02

-

-

-

IPI00011264

Complement factor H-related protein 1

1

-1.5

4.E-02

-

-

-

IPI00011252

Complement component C8 alpha chain

1

-1.5

4.E-02

-

-

-

IPI00879573

Heparin cofactor 2

5

-1.6

2.E-03

-

-

-

IPI00641737

Haptoglobin

6

-1.6

3.E-02

-

-

-

IPI00299778

Serum paraoxonase/lactonase 3

1

-1.6

2.E-03

-

-

-

IPI00028413

Inter-alpha-trypsin inhibitor heavy chain H3

1

-1.7

3.E-02

-

-

-

IPI00299435

Apolipoprotein F

1

-2.0

2.E-04

-

-

-

IPI00027507

Complement factor H-related protein 3

3

-2.7

2.E-03

-

-

-

  1. Plasma (n=20) was analyzed individually by glycoproteomics. The protein fold changes and p-values were calculated as described in the Methods. After 48 hours of culture, the serum-free media of the HIV latently infected T cell line ACH-2 and its parental cell line A3.01 were compared by glycoproteomics as described in the Methods. NS - Not Significant.
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Clinical Proteomics

ISSN: 1559-0275