Fig. 1From: Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: a case study of an urothelial cancer cohort analyzed in the Galaxy frameworkOverview of the data analysis pipeline. a Overview of the performed analysis steps and their corresponding Galaxy histories. b Galaxy workflow for pre-processing was built in a stepwise manner and combined with regular quality control steps. All Galaxy histories and workflows are published, links to them can be found in the ‘Availability of data and materials’ sectionBack to article page