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Table 2 Partial protein list from iTRAQ

From: Identification and Validation of Proteinase 3 and Latent Matrix-Metalloproteinase 9 as Potential Biomarkers for Chronic Lung Transplant Rejection

ID

Accession

Protein name

Molecular function

Number of peptides

BOS/CON

False (−)/CON

True (+)/CON

1

gb|AAM97934.1

Matrix metalloproteinase 9

Protease

9

14.5

3.2

10.4

2

gb|AAB59493.1

Proteinase 3

Protease

1

124.6

59.9

26.0

3

rf|NP_000886.1

Leukotriene A4 hydrolase

Hydrolase

1

6.8

3.0

3.2

4

trm|Q12760

Glutathione S-transferase

Transferase

1

0.1

0.3

0.1

5

trm|Q8N8T4

Hypothetical protein FLJ38902

Transcription factor

1

0.2

0.3

0.3

6

trm|Q8WWQ5

Mucin 5

Extracellular matrix

21

6.2

3.0

3.4

7

rf|XP_039877.6

Mucin 5B precursor

Extracellular matrix

20

4.9

4.0

3.0

8

gb|AAA88083.1

Hexabrachion

Extracellular matrix

1

18.0

4.1

3.6

9

gb|AAF35390.1

Voltage-gated sodium channel alpha subunit

Ion channel

1

6.5

3.3

7.9

10

pir|A61231

Myosin heavy chain nonmuscle form A

Cytoskeletal protein

7

3.9

3.9

4.4

11

spt|Q9UIF3

Tektin 2

Cytoskeletal protein

1

5.1

10.1

4.0

12

spt|P05107

Integrin beta-2 precursor

Receptor

1

9.0

5.0

7.0

13

trm|Q9BTR2

Mesothelin

Cell adhesion

4

0.1

0.3

0.2

14

pdb|1PW9_A

Human lung surfactant, A chain A

Defense/immunity

4

0.2

0.2

0.1

15

pdb|1MHL_C

Myeloperoxidase isoform C

Oxidoreductase

24

4.7

3.0

4.5

16

rf|NP_004659.1

Maltase-glucoamylase

Hydrolase

2

6.0

3.9

6.2

17

dbj|BAC86931.1

Unnamed protein product

 

1

38.4

24.0

26.6

18

prf|1617124A

Cationic antimicrobial protein CAP37

Protease

5

16.1

5.5

10.4

19

rf|NP_004336.1

Cathelicidin antimicrobial peptide

Defense/immunity

2

6.0

8.8

4.7

20

pdb|1ADQ_L

Igm rheumatoid factor Fab, L chain

Defense/immunity

2

7.8

13.6

14.7