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Table 1 List of protein identification parameters

From: Plasma Protein Biomarkers Correlated with the Development of Diet-Induced Type 2 Diabetes in Mice

Protein name (isoform number)

Experimental pI

Ion score

Coverage (%)

Peptide sequence

RBP 4 (1)a

5.3

65

4

K.YWGVASFLQR.G

70

10

K.KDPEGLFLQDNIIAEFSVDEK.G

RBP 4 (2)

5.5

67

4

K.YWGVASFLQR.G

72

10

K.KDPEGLFLQDNIIAEFSVDEK.G

RBP 4 (3)

5.7

66

4

R.FSGLWYAIAK.K

74

10

K.YWGVASFLQR.G

RBP 4 (4)

7.0

71

4

K.YWGVASFLQR.G

70

10

K.KDPEGLFLQDNIIAEFSVDEK.G

Transthyretin (1)b

5.3

66

10

K.TAESGELHGLTTDEK.F

89

15

K.TLGISPFHEFADVVFTANDSGHR.H

Transthyretin (2)

5.8

119

15

K.TLGISPFHEFADVVFTANDSGHR.H

65

16

R.HYTIAALLSPYSYSTTAVVSNPQN

Transthyretin (3)

6.0

127

15

K.TLGISPFHEFADVVFTANDSGHR.H

70

16

R.HYTIAALLSPYSYSTTAVVSNPQN

Transthyretin (4)

6.3

70

2

K.DVFLGTFLYEYSR.R

105

16

K.TLGISPFHEFADVVFTANDSGHR.H

Transthyretin (5)

6.4

157

16

K.TLGISPFHEFADVVFTANDSGHR.H

116

15

R.HYTIAALLSPYSYSTTAVVSNPQN

Transthyretin (6)

6.6

130

16

K.TLGISPFHEFADVVFTANDSGHR.H

97

15

R.HYTIAALLSPYSYSTTAVVSNPQN

Apolipoprotein A1 (1)c

5.5

74

3

K.WKEDVELYR.Q

67

4

K.VAPLGAELQESAR.Q

Apolipoprotein A1 (2)

5.6

74

3

K.WKEDVELYR.Q

67

4

K.VAPLGAELQESAR.Q

Apolipoprotein A1 (3)

5.7

74

3

K.WKEDVELYR.Q

88

4

K.VAPLGAELQESAR.Q

Apolipoprotein A1 (4)

5.8

74

3

K.WKEDVELYR.Q

76

4

K.VAPLGAELQESAR.Q

Apolipoprotein A1 (5)

5.9

74

3

K.WKEDVELYR.Q

76

4

K.VAPLGAELQESAR.Q

Apolipoprotein A1 (6)

6.0

74

3

K.WKEDVELYR.Q

67

4

K.VAPLGAELQESAR.Q

Kininogen (1)d

5.5

73

2

K.TDGSPTFYSFK.Y

90

4

K.EVLGHSIAQLNAENDHPFYYK.I

Kininogen (2)

5.6

70

2

K.TDGSPTFYSFK.Y

90

4

K.EVLGHSIAQLNAENDHPFYYK.I

  1. Two ion scores from MS/MS analysis considered for identification of each protein spot are tabulated above
  2. aProtein name: Plasma retinol-binding protein precursor—mouse; Accession code: BAB25881; Nominal mass: 20386; Calculated pI value: 4.98
  3. bProtein name: Transthyretin precursor—mouse; Accession code: VBMS; Nominal mass: 15766; Calculated pI value: 5.77
  4. cProtein name: Apolipoprotein A-I precursor—mouse; Accession code: JC1237; Nominal mass: 30526; Calculated pI value: 5.51
  5. dProtein name: High molecular weight kininogen variant—mouse; Accession code: Q6S9I1_MOUSE; Nominal mass: 53172; Calculated pI value: 4.88
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Clinical Proteomics

ISSN: 1559-0275