Table 1 Summary of glycoproteomic databases
Database | Type | Species | Method | Entries |
|---|---|---|---|---|
Unipep | N-Glycosylated proteins and peptides | Homo sapiens | Hydrazide chemistry & Solid Phase Extraction, in-silico triptic digestion of IPI proteins, and prediction of NXS/T glycosylation site with proteotypic potential | 2265 |
Glycofly | N-Glycosylated proteins and peptides | Drosophila melanogaster | Hydrazide chemistry and Solid Phase Extraction | 740 |
Glycofish | N-Glycosylated proteins and peptides | Danio Rerio | Hydrazide chemistry and Solid Phase Extraction | 269 |
GlycoSuiteDB | O-linked and N-linked Glycoproteins and glycans | Â | Published glycoproteins with different methods | 9436 |
GlycoProtDB | N2 and mouse tissues N-Glycoproteins | Caenorhabditis elegans | Lectin Concavilin A Chromatography | 1465 |
Mus Musculus | ||||
O -GlycBase NetOGlyc | O and C-Glycosylated proteins | Combination of references | Data curation from literature and coupling ZFN gene targeting, SimpleCell and Lectin Chromatography | 2413 |
3000 | ||||
dbOGAP | O-GlcNAcylated proteins | Homo Sapiens | Curation from literature and SVM based prediction | 798 (exp) 300 (pred) |
Mus Musculus | ||||
Rattus Norvegicus | ||||
Drosophila Melanogaster | ||||
Xenopus Laevis |