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Table 2 List of novel proteins identified in C. neoformans var. grubii

From: Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry

  Protein name Genome search specific peptide Genomic co – ordinates of novel gene GenBank Accession (Transcript identifier) Homologs in related species Putative function
1 CNAG_IOB_prot1 STPLTVSEDQEDELLSIVPIK; AIVGSGLGILSVWNR Chromosome 1: 1026293–1027893; Negative strand GenBank: JZ152657.1 (CNAG_IOB_PROT1) XP_777889.1 (Cryptococcus neoformans var. neoformans B-3501A); XP_566713.1 (Cryptococcus neoformans var. neoformans JEC21); EAU84048.2 (Coprinopsis cinerea okayama 7#130); EDP43708.1 (Malassezia globosa CBS 7966); Monoubiquitination related protein
2 CNAG_IOB_prot2 DLEIGAPVSIGDTPSPEDK; SLSPEVQASLPADIR Chromosome 2: 852949–855029; Positive strand GenBank: JZ152658.1 (CNAG_IOB_PROT2) XP_777044.1 (Cryptococcus neoformans var. neoformans B-3501A); Integrase rve protein
3 CNAG_IOB_prot3 LFDNDADGDDDDDQGAVNVNIR Chromosome 5: 65512–66695; Positive strand GenBank: JZ152659.1 (CNAG_IOB_PROT3) XP_570553.1 (Cryptococcus neoformans var. neoformans JEC21); XP_776190.1 (Cryptococcus neoformans var. neoformans B-3501A); Hypothetical protein
4 CNAG_IOB_prot4 WGILEGEFGK, LTFQFITSSEK, LVNEGDWEGGLSEVEDIVR Chr 11: 13611–17959; Negative strand GenBank: JZ152660.1 (CNAG_IOB_PROT4) XP_776934.1 (Cryptococcus neoformans var. neoformans B-3501A), XP_569839.1 (Cryptococcus neoformans var. neoformans JEC21), XP_003192571.1 (Cryptococcus gattii WM276) Retrograde transport, endosome to Golgi-related protein