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Table 1 Proteins selected for development of SRM assays in urine

From: Quantification of angiotensin II-regulated proteins in urine of patients with polycystic and other chronic kidney diseases by selected reaction monitoring

Protein/uniprot ID

Uniprot ID

Peptide amino acid sequence

Heme oxygenase-1 (HO-1)ab

P09601

VQDSAPVETPR

TEPELLVAHAYTR

Thrombospondin-1 (TSP-1)ab

P07996

TIVTTLQDSIR

GGVNDFQGVLQNVR

Glutamate-ammonia ligase(GLUL)a

P15104

LTGFHETSNINDFSAGVANR

TCLLNETGDEPFQYK

LVLCEVFK

Ras homologue family member B (RHOB)ab

P62745

LVVVGDGACGK

IQAYDYLECSAK

Osteonectin (SPARC)a

P09486

YIPPCLDSELTEFPLR

FFETCDLDNDK

Transforming growth factor beta, receptor II (TGFBR2)a

P37173

LDPTLSVDDLANSGQVGTAR

IFPYEEYASWK

Bone marrow stromal cell antigen 1 (BST1)a

Q10588

GFFADYEIPNLQK

AGLIIPLFLVLASR

Lysophospholipase I (LYPA1)a

O75608|

ASFPQGPIGGANR

LAGVTALSCWLPLR

Laminin, beta 2 (LAMB2)a

P55268

LQEGQTLEFLVASVPK

GSCYPATGDLLVGR

Drebrin-like (DBNL)ab

Q9UJU6

VAGTGEGGLEEMVEELNSGK

FQDVGPQAPVGSVYQK

Programmed cell death 4 (PDCD4)b

Q53EL6

APQLVGQFIAR

SGVPVLAVSLALEGK

Thioredoxin interacting protein (TXNIP)bc

Q9H3M7

SFEVVFNDPEK

HTYLANGQTK

Pleckstrin-homology like domain, Family A, Member 1(PHLDA1)bc

Q8WV24

AAGNGEAEPSGGPSYAGR

YMYFTVVMAFGK

Rho/Rac guanine nucleotide exchange factor 2 (ARHGEF2)b

Q92974

DLLVGPGVELLLTPR

ELLSNVDEGIYQLEK

Hsp40 homologue, Subfamily B, Member 4 (DNAJB4)bc

Q9UDY4

IIGYGLPFPK

EALCGCSINVPTLDGR

Valosin containing protein (p97)/p47 complex interacting protein (VCPIP1)b

Q96JH7

TEPSVFTASSSNSELIR

SSGDYSATFLPGLIPAEK

Epidermal growth factor receptor (EGFR)c

P00533

EISDGDVIISGNK

ELVEPLTPSGEAPNQALLR

RNA binding motif, protein 3 (RBM3)c

P98179

YYDSRPGGYGYGYGR

GGGDQGYGSGR

  1. Bold peptides were detected and selected for absolute quantification in human urine
  2. aProteins definitively found in urine in prior studies
  3. bProteins previously monitored by SRM in our study
  4. cProteins predicted to be secretory based on computational algorithm (SignalIP)