Skip to main content

Table 1 Proteins that increased in MSC in response to IFN-γ treatment

From: Interferon γ induced compositional changes in human bone marrow derived mesenchymal stem/stromal cells

ID

Gene

Description

Donor

4

69

74

140

150

(A)

       

 Q5T3U5

ABCC10

Multidrug resistance-associated protein 7

1.3

CTL

CTL

CTL

IFN

 Q9UPQ3

AGAP1

Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1

4.3

6.3

CTL

4.0

0.8

 Q9ULJ7

ANKRD50

Ankyrin repeat domain-containing protein 50

1.8

1.0

5.5

3.8

3.3

 Q6ZW76

ANKS3

Ankyrin repeat and SAM domain-containing protein 3

CTL

CTL

CTL

0.6

CTL

 Q8NCL9

APCDD1L

Protein APCDD1-like

CTL

2.4

CTL

1.9

3.0

 Q9BSF8

BTBD10

BTB/PoZ domain-containing protein 10

CTL

CTL

CTL

CTL

CTL

 Q8N5S9

CAMKK1

Calcium/calmodulin-dependent protein kinase kinase 1

CTL

CTL

0.8

3.9

CTL

 P49674

CSNK1E

Casein kinase I isoform epsilon

4.2

6.9

1.4

CTL

5.3

 Q9Y6M4

CSNK1G3

Casein kinase I isoform gamma-3

CTL

CTL

1.1

CTL

CTL

 P39880

CUX1

Homeobox protein cut-like 1

1.1

CTL

CTL

13.7

CTL

 Q9H8V3

ECT2

Protein ECT2

CTL

CTL

1.6

3.7

1.6

 O95864

FADS2

Fatty acid desaturase 2

8.3

4.2

4.5

2.2

1.7

 P02671

FGA

Fibrinogen alpha chain

CTL

CTL

73.9

0.5

4.4

 P02679

FGG

Fibrinogen gamma chain

18.9

CTL

42.8

0.4

3.0

 Q9NYZ3

GTSE1

G2 and S phase-expressed protein 1

CTL

CTL

CTL

CTL

4.0

 Q9Y2K7

KDM2A

Lysine-specific demethylase 2A

5.4

0.3

1.1

CTL

6.4

 Q9BVG8

KIFC3

Kinesin-like protein KIFC3

5.2

CTL

CTL

1.5

CTL

 Q659C4

LARP1B

La-related protein 1B

3.5

CTL

CTL

CTL

CTL

 Q15013

MAD2L1BP

MAD2L1-binding protein

CTL

CTL

CTL

0.7

CTL

 Q07864

POLE

DNA polymerase epsilon catalytic subunit A

CTL

CTL

3.5

CTL

1.1

 Q9P2K3

RCOR3

REST Corepressor 3

CTL

CTL

CTL

CTL

CTL

 O15541

RNF113A

RING finger protein 113A

1.2

1.2

CTL

18.5

4.8

 Q9GZN7

ROGDI

Protein rogdi homolog

CTL

0.0

CTL

CTL

1.8

 Q99719

SEPT5

Septin-5

4.8

CTL

CTL

CTL

0.5

 O95359

TACC2

Transforming acidic coiled-coil-containing protein 2

CTL

CTL

CTL

CTL

CTL

 O15040

TECPR2

Tectonin beta-propeller repeat-containing protein 2

2.0

3.8

CTL

6.3

0.8

 Q9P273

TENM3

Teneurin-3

3.9

CTL

3.2

2.1

1.3

 Q86SZ2

TRAPPC6B

Trafficking protein particle complex subunit 6B

0.3

CTL

CTL

CTL

 Q8IWR1

TRIM59

Tripartite motif-containing protein 59

CTL

3.2

4.0

CTL

0.9

 Q9NPG3

UBN1

Ubinuclein-1

CTL

CTL

CTL

CTL

CTL

 P62068

USP46

Ubiquitin carboxyl-terminal hydrolase 46

CTL

CTL

1.5

CTL

CTL

 Q5ST30

VARS2

Valine–tRNA ligase, mitochondrial

CTL

CTL

1.9

3.5

CTL

 Q9Y2K1

ZBTB1

Zinc finger and BTB domain-containing protein 1

0.5

CTL

CTL

7.3

CTL

 Q9ULJ6

ZMIZ1

Zinc finger MIZ domain-containing protein 1

4.6

CTL

CTL

1.6

CTL

(B)

       

 Q9HCE6

ARHGEF10L

Rho guanine nucleotide exchange factor 10-like protein

IFN

IFN

IFN

 Q6ICH7

ASPHD2

Aspartate beta-hydroxylase domain-containing protein 2

IFN

IFN

IFN

 Q8WXX7

AUTS2

Autism susceptibility gene 2 protein

IFN

IFN

IFN

 Q9BX70

BTBD2

BTB/POZ domain-containing protein 2

2.6

4.3

3.2

IFN

 Q5VU97

CACHD1

VWFA and cache domain-containing protein 1

1.8

IFN

IFN

IFN

IFN

 Q9BSQ5

CCM2

Cerebral cavernous malformations 2 protein

2.6

3.9

3.4

0.5

3.7

 Q86YQ8

CPNE8

Copine-8

4.4

5.4

2.0

3.5

1.9

 Q5H9U9

DDX60L

Probable ATP-dependentRNA helicase DDX60-like

IFN

IFN

IFN

8.1

8.2

 Q96C10

DHX58

Probable ATP-dependentRNA helicase DHX58

IFN

IFN

IFN

IFN

IFN

 Q96J88

EPSTI1

Epithelial-stromal interaction protein 1

IFN

IFN

IFN

IFN

IFN

 Q9BTL3

FAM103A1

RNMT-activating mini protein

IFN

IFN

IFN

 Q96MK3

FAM20A

Pseudokinase FAM20A

5.0

10.0

4.9

IFN

IFN

 Q8IXL6

FAM20C

Extracellular serine/threonine protein kinase FAM20C

IFN

1.0

IFN

11.1

IFN

 Q13480

GAB1

GRB2-associated-binding protein 1

IFN

2.2

4.8

IFN

 Q14435

GALNT3

Polypeptide N-acetylgalactosaminyltransferase 3

IFN

12.1

8.5

3.6

IFN

 P36269

GGT5

Gamma-glutamyltransferase 5

6.2

1.0

16.8

2.5

IFN

 Q13547

HDAC1

Histone deacetylase 1

6.8

1.9

3.6

4.7

0.8

 P01112

HRAS

GTPase HRas

13.6

1.4

1.2

4.1

IFN

 P01579

IFNG

Interferon gamma

IFN

IFN

IFN

IFN

 Q13572

ITPK1

Inositol-tetrakisphosphate 1-kinase

IFN

3.9

2.5

1.6

3.0

 Q16363

LAMA4

Laminin subunit alpha-4

1.9

2.4

3.2

3.4

12.1

 Q14392

LRRC32

Leucine-rich repeat-containing protein 32

IFN

IFN

IFN

IFN

 P11137

MAP2

Microtubule-associated protein 2

IFN

IFN

IFN

 Q96DP5

MTFMT

Methionyl-tRNA formyltransferase, mitochondrial

IFN

IFN

IFN

 O75113

N4BP1

NEDD4-binding protein 1

3.5

2.0

2.1

4.6

3.5

 Q7Z2Y5

NRK

Nik-related protein kinase

IFN

IFN

IFN

 Q9Y5H3

PCDHGA10

Protocadherin gamma-A10

IFN

IFN

IFN

 Q9H4M7

PLEKHA4

Pleckstrin homology domain-containing family A member 4

IFN

IFN

IFN

4.7

IFN

 Q16647

PTGIS

Prostacyclin synthase

IFN

1.3

52.2

37.4

2.0

 P35354

PTGS2

Prostaglandin G/H synthase 2

IFN

IFN

IFN

 Q15262

PTPRK

Receptor-type tyrosine-protein phosphatase kappa

4.5

2.1

5.7

4.2

3.3

 P05120

SERPINB2

Plasminogen activator inhibitor 2

IFN

IFN

IFN

1.0

CTL

 P22732

SLC2A5

Solute carrier family 2, facilitated glucose transporter member 5

IFN

IFN

IFN

 P84022

SMAD3

Mothers against decapentaplegic homolog 3

4.2

0.2

5.9

4.6

1.5

 Q9BXI6

TBC1D1

TBC1 domain family member 1

3.8

IFN

10.0

1.5

2.6

 Q9BXS4

TMEM59

Transmembrane protein 59

4.9

IFN

IFN

0.9

 Q9BVA1

TUBB2B

Tubulin beta-2B chain

0.8

1.5

IFN

65.6

IFN

 P22415

USF1

Upstream stimulatory factor 1

IFN

IFN

IFN

 O75317

USP12

Ubiquitin carboxyl-terminal hydrolase 12

IFN

IFN

2.2

IFN

 Q702N8

XIRP1

Xin actin-binding repeat-containing protein 1

IFN

IFN

IFN

IFN

7.3

 Q9HCC9

ZFYVE28

Lateral signaling target protein 2 homolog

IFN

IFN

IFN

  1. Proteins that were increased following interferon treatment with transcripts that are (A) designated as IFN-γ responsive or (B) not designated as IFN-γ responsive. Results are presented as fold increase following 20 h of IFN-γ treatment. IFN indicates only detected in interferon treated cells. CTL indicates only detected in untreated cells. – indicates not detected in indicated donor sample