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Table 6 Biological Process from the filtered (best charge state best amino acid sequence) X!TANDEM and SEQUEST results where the difference between room temperature versus ice cold samples was at least fivefold or greater for 718 gene symbols

From: The proteins cleaved by endogenous tryptic proteases in normal EDTA plasma by C18 collection of peptides for liquid chromatography micro electrospray ionization and tandem mass spectrometry

Pathway ID Pathway description Count in gene set False discovery rate
GO:0006996 Organelle organization 208 0.00138
GO:0016043 Cellular component organization 312 0.00138
GO:0071840 Cellular component organization or biogenesis 318 0.00138
GO:0009987 Cellular process 696 0.00194
GO:0008152 Metabolic process 558 0.0022
GO:0019538 Protein metabolic process 267 0.0022
GO:0044238 Primary metabolic process 505 0.0022
GO:0044237 Cellular metabolic process 496 0.00405
GO:0043170 Macromolecule metabolic process 441 0.00535
GO:0070887 Cellular response to chemical stimulus 166 0.00591
GO:0044260 Cellular macromolecule metabolic process 409 0.00645
GO:0071704 Organic substance metabolic process 510 0.00648
GO:0006464 Cellular protein modification process 185 0.0108
GO:0065007 Biological regulation 557 0.012
GO:0044763 Single-organism cellular process 573 0.015
GO:0048518 Positive regulation of biological process 314 0.0154
GO:0048585 Negative regulation of response to stimulus 103 0.0181
GO:0043412 Macromolecule modification 191 0.0223
GO:0009893 Positive regulation of metabolic process 229 0.0261
GO:0043933 Macromolecular complex subunit organization 150 0.0262
GO:0050789 Regulation of biological process 536 0.0262
GO:0044267 Cellular protein metabolic process 222 0.0341
GO:0008150 Biological_process 695 0.041
GO:0018193 Peptidyl-amino acid modification 72 0.0477
  1. See the Additional file 1, Additional file 2, Additional file 3, Additional file 4 for the full list of proteins. The headings are exactly as supplied by STRING. The Filtered (Filter 2) data can be found in Additional file 1, Additional file 2, Additional file 3, Additional file 4