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Table 6 Biological Process from the filtered (best charge state best amino acid sequence) X!TANDEM and SEQUEST results where the difference between room temperature versus ice cold samples was at least fivefold or greater for 718 gene symbols

From: The proteins cleaved by endogenous tryptic proteases in normal EDTA plasma by C18 collection of peptides for liquid chromatography micro electrospray ionization and tandem mass spectrometry

Pathway ID

Pathway description

Count in gene set

False discovery rate

GO:0006996

Organelle organization

208

0.00138

GO:0016043

Cellular component organization

312

0.00138

GO:0071840

Cellular component organization or biogenesis

318

0.00138

GO:0009987

Cellular process

696

0.00194

GO:0008152

Metabolic process

558

0.0022

GO:0019538

Protein metabolic process

267

0.0022

GO:0044238

Primary metabolic process

505

0.0022

GO:0044237

Cellular metabolic process

496

0.00405

GO:0043170

Macromolecule metabolic process

441

0.00535

GO:0070887

Cellular response to chemical stimulus

166

0.00591

GO:0044260

Cellular macromolecule metabolic process

409

0.00645

GO:0071704

Organic substance metabolic process

510

0.00648

GO:0006464

Cellular protein modification process

185

0.0108

GO:0065007

Biological regulation

557

0.012

GO:0044763

Single-organism cellular process

573

0.015

GO:0048518

Positive regulation of biological process

314

0.0154

GO:0048585

Negative regulation of response to stimulus

103

0.0181

GO:0043412

Macromolecule modification

191

0.0223

GO:0009893

Positive regulation of metabolic process

229

0.0261

GO:0043933

Macromolecular complex subunit organization

150

0.0262

GO:0050789

Regulation of biological process

536

0.0262

GO:0044267

Cellular protein metabolic process

222

0.0341

GO:0008150

Biological_process

695

0.041

GO:0018193

Peptidyl-amino acid modification

72

0.0477

  1. See the Additional file 1, Additional file 2, Additional file 3, Additional file 4 for the full list of proteins. The headings are exactly as supplied by STRING. The Filtered (Filter 2) data can be found in Additional file 1, Additional file 2, Additional file 3, Additional file 4