Fig. 9

Comparison of identified and quantified proteins between the four different staining methods. a Proteins identified in all four replicates per staining method were compared for their proteome overlap. The heat map depicts the percentage of proteins, which were shared between two staining methods. b The mean protein abundances were calculated for each staining method based on the log2 transformed label-free quantitation values (LFQ) and plotted against each other. Shown are also the corresponding Pearson correlation coefficients