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Table 1 An overview of upregulated proteins identified in Merkel cell carcinoma cell lines

From: Quantitative proteome analysis of Merkel cell carcinoma cell lines using SILAC

Cell line

UniProt entry name

Protein name

Gene symbol

Ratio (H/L)

BroLi

MFRN1_HUMAN

Mitoferrin-1

SLC25A37

9.64

SF01_HUMAN

Splicing factor 1

SF1

1.92

N4BP1_HUMAN

NEDD4-binding protein 1

N4BP1

1.65

MKL-1

H2A1H_HUMAN

Histone H2A type 1-H

HIST1H2AH

5.25

HMGN2_HUMAN

Non-histone chromosomal protein HMG-17

HMGN2

3.86

C2C2L_HUMAN

C2 domain-containing protein 2-like

C2CD2L

3.63

DPY30_HUMAN

Protein dpy-30 homolog

DPY30

3.56

STON1_HUMAN

Stonin-1

STON1

3.18

PREX2_HUMAN

Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2 protein

PREX2

3.11

CCAR1_HUMAN

Cell division cycle and apoptosis regulator protein 1

CCAR1

2.96

RFC1_HUMAN

Replication factor C subunit 1

RFC1

2.89

ATPB_HUMAN

ATP synthase subunit beta, mitochondrial

ATP5B

2.87

ROAA_HUMAN

Heterogeneous nuclear ribonucleoprotein A/B

HNRNPAB

2.64

DJB14_HUMAN

DnaJ homolog subfamily B member 14

DNAJB14

2.53

SF3B1_HUMAN

Splicing factor 3B subunit 1

SF3B1

2.47

RL29_HUMAN

60S ribosomal protein L29

RPL29

2.44

HNRPM_HUMAN

Heterogeneous nuclear ribonucleoprotein M

HNRNPM

2.39

SUMO4_HUMAN

Small ubiquitin-related modifier 4

SUMO4

2.38

NDUS7_HUMAN

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NDUFS7

2.29

HSP7C_HUMAN

Heat shock cognate 71 kDa protein

HSPA8

2.19

CH60_HUMAN

60 kDa heat shock protein, mitochondrial

HSPD1

2.10

BSDC1_HUMAN

BSD domain-containing protein 1

BSDC1

2.06

RS30_HUMAN

40S ribosomal protein S30

FAU

2.01

MXRA5_HUMAN

Matrix-remodeling-associated protein 5

MXRA5

1.96

ROA2_HUMAN

Heterogeneous nuclear ribonucleoproteins A2/B1

HNRNPA2B1

1.89

ROA1_HUMAN

Heterogeneous nuclear ribonucleoprotein A1

HNRNPA1

1.89

ROA3_HUMAN

Heterogeneous nuclear ribonucleoprotein A3

HNRNPA3

1.89

NPM_HUMAN

Nucleophosmin

NPM1

1.80

CH10_HUMAN

10 kDa heat shock protein, mitochondrial

HSPE1

1.70

STK24_HUMAN

Serine/threonine-protein kinase 24

STK24

1.70

HNRPC_HUMAN

Heterogeneous nuclear ribonucleoproteins C1/C2

HNRNPC

1.66

H2B1O_HUMAN

Histone H2B type 1-O

HIST1H2BO

1.60

PABP1_HUMAN

Polyadenylate-binding protein 1

PABPC1

1.58

I23O2_HUMAN

Indoleamine 2,3-dioxygenase 2

IDO2

1.54

MKL-2

PADI6_HUMAN

Protein-arginine deiminase type-6

PADI6 PAD6

9.47

CTL2_HUMAN

Choline transporter-like protein 2

SLC44A2

6.74

SRSF3_HUMAN

Serine/arginine-rich splicing factor 3

SRSF3

5.87

HMGN2_HUMAN

Non-histone chromosomal protein HMG-17

HMGN2

5.10

PABP1_HUMAN

Polyadenylate-binding protein 1

PABPC1

4.02

NDUS7_HUMAN

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NDUFS7

3.84

H2B1H_HUMAN

Histone H2B type 1-H

HIST1H2BH

3.15

COF1_HUMAN

Cofilin-1

CFL1

2.30

LRRT3_HUMAN

Leucine-rich repeat transmembrane neuronal protein 3

LRRTM3

2.27

CH10_HUMAN

10 kDa heat shock protein, mitochondrial

HSPE1

2.20

ACM2_HUMAN

Muscarinic acetylcholine receptor M2

CHRM2

2.14

S38AA_HUMAN

Putative sodium-coupled neutral amino acid transporter 10

SLC38A10

2.14

ROA1_HUMAN

Heterogeneous nuclear ribonucleoprotein A1

HNRNPA1

2.08

WDR62_HUMAN

WD repeat-containing protein 62

WDR62

2.02

ROA2_HUMAN

Heterogeneous nuclear ribonucleoproteins A2/B1

HNRNPA2B1

2.01

STMN1_HUMAN

Stathmin

STMN1

1.80

TM266_HUMAN

Transmembrane protein 266

TMEM266

1.77

H2B2E_HUMAN

Histone H2B type 2-E

HIST2H2BE

1.66

TBA1A_HUMAN

Tubulin alpha-1A chain

TUBA1A

1.64

TBA1B_HUMAN

Tubulin alpha-1B chain

TUBA1B

1.64

HNRPK_HUMAN

Heterogeneous nuclear ribonucleoprotein K

HNRNPK

1.60

PRDX2_HUMAN

Peroxiredoxin-2

PRDX2

1.50

PeTa

ROA2_HUMAN

Heterogeneous nuclear ribonucleoproteins A2/B1

HNRNPA2B1

4.46

ROA3_HUMAN

Heterogeneous nuclear ribonucleoprotein A3

HNRNPA3

4.46

H2A1B_HUMAN

Histone H2A type 1-B/E

HIST1H2AB

4.23

H2AJ_HUMAN

Histone H2A.J

H2AFJ

4.23

ROA1_HUMAN

Heterogeneous nuclear ribonucleoprotein A1

HNRNPA1

2.98

NIBL1_HUMAN

Niban-like protein 1

FAM129B

2.97

CTL2_HUMAN

Choline transporter-like protein 2

SLC44A2

2.96

REPS2_HUMAN

RalBP1-associated Eps domain-containing protein 2

REPS2

2.72

URGCP_HUMAN

Up-regulator of cell proliferation

URGCP

2.69

H14_HUMAN

Histone H1.4

HIST1H1E

2.67

H33_HUMAN

Histone H3.3

H3F3A

2.39

K0895_HUMAN

Uncharacterized protein KIAA0895

KIAA0895

2.36

H15_HUMAN

Histone H1.5

HIST1H1B

2.17

H2B1N_HUMAN

Histone H2B type 1-N

HIST1H2BN

1.91

H2B2E_HUMAN

Histone H2B type 2-E

HIST2H2BE

1.90

PRDX2_HUMAN

Peroxiredoxin-2

PRDX2

1.80

WaGa

SLX4I_HUMAN

Protein SLX4IP

SLX4IP

33.84

TMM56_HUMAN

Transmembrane protein 56

TMEM56

8.88

S38AA_HUMAN

Putative sodium-coupled neutral amino acid transporter 10

SLC38A10

6.38

COQ6_HUMAN

Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial

COQ6

4.57

NEK5_HUMAN

Serine/threonine-protein kinase Nek5

NEK5

4.36

PEX16_HUMAN

Peroxisomal membrane protein PEX16

PEX16

4.33

PEAK1_HUMAN

Pseudopodium-enriched atypical kinase 1

PEAK1

3.95

PCBP2_HUMAN

Poly(rC)-binding protein 2

PCBP2

3.83

HS71A_HUMAN

Heat shock 70 kDa protein 1A

HSPA1A

3.66

FBX41_HUMAN

F-box only protein 41

FBXO41

3.59

HNRPC_HUMAN

Heterogeneous nuclear ribonucleoproteins C1/C2

HNRNPC

3.55

HMMR_HUMAN

Hyaluronan mediated motility receptor

HMMR

3.37

SMYD5_HUMAN

SET and MYND domain-containing protein 5

SMYD5

3.27

MBNL2_HUMAN

Muscleblind-like protein 2

MBNL2

2.47

H4_HUMAN

Histone H4

HIST1H4A

2.45

HNF4A_HUMAN

Hepatocyte nuclear factor 4-alpha

HNF4A

2.35

ASPG_HUMAN

N(4)-(beta-N-acetylglucosaminyl)-l-asparaginase

AGA

2.20

H2B1O_HUMAN

Histone H2B type 1-O

HIST1H2BO

1.99

H2B1D_HUMAN

Histone H2B type 1-D

HIST1H2BD

1.97

TBB5_HUMAN

Tubulin beta chain

TUBB

1.89

UGGG1_HUMAN

UDP-glucose:glycoprotein glucosyltransferase 1

UGGT1

1.80

UB2J1_HUMAN

Ubiquitin-conjugating enzyme E2 J1

UBE2J1

1.80

RLA2_HUMAN

60S acidic ribosomal protein P2

RPLP2

1.77

SF01_HUMAN

Splicing factor 1

SF1

1.71

HNRL2_HUMAN

Heterogeneous nuclear ribonucleoprotein U-like protein 2

HNRNPUL2

1.71

ROAA_HUMAN

Heterogeneous nuclear ribonucleoprotein A/B

HNRNPAB

1.70

POP1_HUMAN

Ribonucleases P/MRP protein subunit POP1

POP1

1.69

PRDX2_HUMAN

Peroxiredoxin-2

PRDX2

1.68

CE57L_HUMAN

Centrosomal protein CEP57L1

CEP57L1

1.67

CCDC6_HUMAN

Coiled-coil domain-containing protein 6

CCDC6

1.67

KCTD9_HUMAN

BTB/POZ domain-containing protein KCTD9

KCTD9

1.66

ADCY1_HUMAN

Adenylate cyclase type 1

ADCY1

1.59

S35E2_HUMAN

Solute carrier family 35 member E2

SLC35E2

1.55

ATP5J_HUMAN

ATP synthase-coupling factor 6, mitochondrial

ATP5J

1.51

ATPA_HUMAN

ATP synthase subunit alpha, mitochondrial

ATP5A1

1.50

MCC13

CLCB_HUMAN

Clathrin light chain B

CLTB

4.71

HSPB1_HUMAN

Heat shock protein beta-1

HSPB1

3.23

SNX4_HUMAN

Sorting nexin-4

SNX4

2.83

RL23A_HUMAN

60S ribosomal protein L23a

RPL23A

2.82

PROF1_HUMAN

Profilin-1

PFN1

2.51

H2B1C_HUMAN

Histone H2B type 1-C/E/F/G/I

HIST1H2BC

2.47

ZN407_HUMAN

Zinc finger protein 407

ZNF407

2.44

H2B1K_HUMAN

Histone H2B type 1-K

HIST1H2BK

2.42

OPRD_HUMAN

Delta-type opioid receptor

OPRD1

2.42

HGB1A_HUMAN

Putative high mobility group protein B1-like 1

HMGB1P1

2.35

PSME1_HUMAN

Proteasome activator complex subunit 1

PSME1

2.29

PRDX1_HUMAN

Peroxiredoxin-1

PRDX1

2.22

CAC1G_HUMAN

Voltage-dependent T-type calcium channel subunit alpha-1G

CACNA1G

2.20

H2B2F_HUMAN

Histone H2B type 2-F

HIST2H2BF

2.18

K2C5_HUMAN

Keratin, type II cytoskeletal 5

KRT5

2.17

RL4_HUMAN

60S ribosomal protein L4

RPL4

2.15

LDHB_HUMAN

l-Lactate dehydrogenase B chain

LDHB

2.14

MT1E_HUMAN

Metallothionein-1E

MT1E

2.14

ILRL2_HUMAN

Interleukin-1 receptor-like 2

IL1RL2

1.94

MYPC2_HUMAN

Myosin-binding protein C, fast-type

MYBPC2

1.93

NONO_HUMAN

Non-POU domain-containing octamer-binding protein

NONO

1.84

LMNA_HUMAN

Prelamin-A/C

LMNA

1.82

K2C8_HUMAN

Keratin, type II cytoskeletal 8

KRT8

1.66

NUCL_HUMAN

Nucleolin

NCL

1.64

PDLI1_HUMAN

PDZ and LIM domain protein 1

PDLIM1

1.64

RLA1_HUMAN

60S acidic ribosomal protein P1

RPLP1

1.64

BAF_HUMAN

Barrier-to-autointegration factor

BANF1

1.63

NPM_HUMAN

Nucleophosmin

NPM1

1.61

HNRPK_HUMAN

Heterogeneous nuclear ribonucleoprotein K

HNRNPK

1.61

YBOX1_HUMAN

Nuclease-sensitive element-binding protein 1

YBX1

1.60

H2AJ_HUMAN

Histone H2A.J

H2AFJ

1.56

RL34_HUMAN

60S ribosomal protein L34

RPL34

1.55

ROA1_HUMAN

Heterogeneous nuclear ribonucleoprotein A1

HNRNPA1

1.52

RS28_HUMAN

40S ribosomal protein S28

RPS28

1.52

CQ047_HUMAN

Uncharacterized protein C17orf47

C17orf47

1.52