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Table 4 (a) Biological processes categories of Shared (I) and Unique (II) functional indicators identified by PANTHER classification system, (b) Subcategories of the main biological processes

From: A comprehensive analysis of sialolith proteins and the clinical implications

(a) Biological processes categories of Shared (I) and Unique (II) functional indicators identified by PANTHER classification system

Biological process

(I) Shared functional indicators

(II)Panther scores for unique indicatorsa

Homologous

Non homologous

Homologous

Non nomologous

Categories

EEh

EEnh

BMh

BMnh

CyMBV

ISP

SMA

MBO

RMA

PtID

Biological adhesion

0.02

0.02

0.02

0.01

0.01

0.02

0.02

0.02

0.02

0.01

Biological regulation

0.12

0.13

0.13

0.13

0.11

0.11

0.13

0.09

0.12

0.13

Cell. comp. organiz/bio gen.

0.13

0.14

0.09

0.07

0.11

0.08

0.12

0.10

0.13

0.07

Cellular process

0.46

0.34

0.33

0.31

0.30

0.39

0.38

0.39

0.32

0.31

Developmental process

0.02

0.03

0.01

0.02

0.01

0.01

0.03

0.02

0.03

0.02

Immune system process

0.15

0.14

0.20

0.19

0.16

0.19

0.12

0.21

0.12

0.19

Localization

0.10

0.10

0.09

0.10

0.08

0.09

0.13

0.11

0.10

0.10

Metabolic process

0.28

0.24

0.24

0.26

0.27

0.32

0.26

0.28

0.26

0.26

Multicell. organismal process

0.03

0.03

0.03

0.02

0.03

0.02

0.02

0.02

0.02

0.02

Reproduction

0.00

0.00

0.00

0.00

0.00

0.00

0.00

0.00

0.00

0.00

Response to stimulus

0.32

0.31

0.35

0.32

0.31

0.36

0.30

0.38

0.28

0.32

(b) Main subcategories from relevant biological process

Cellular process

Response to stimulus

Metabolic process

Cellular metabolic process

Cellular response to stimulus

Cellular metabolic process

Cellular membrane organization

Immune response

Primary metabolic process

Cellular response to stimulus

Response to stress

Organic metabolic process

Signal transduction

Response to chemicals

 

Cell cycle

Response to abiotic stimulus

 
  1. h homologous nh no-homologous
  2. aPanther scores: are the percent of gene hits against the total function hits for each indicator