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Table 1 Identification results based on conventional urine culture and 16S rRNA gene sequencing

From: Identification of pathogens from native urine samples by MALDI-TOF/TOF tandem mass spectrometry

N.o.Urine culture identificationDNA concentration (ng/μL)16S rRNA sequencing results
UR1Klebsiella pneumoniae ESBL3.15100% Enterobacteriaceae
UR2Klebsiella oxytoca9.1497% Enterobacteriaceae
UR3Klebsiella pneumoniae ESBL6.0190% Enterobacteriaceae; 5.1% Granulicatella; 1.1% Anaerococcus
UR4Proteus mirabilis6.9697.7% Proteus; 1% Enterobacteriaceae
UR5Enterococcus faecalis16.2221.8% Pseudomonas; 13.7% Propionibacterium acnes; 11% Lactobacillus helveticus; 8.1% Adhaeribacter; 8% Acinetobacter; 5.9% Staphylococcus; 4.9% Stenotrophomonas; 3.8% Hydrogenophaga; 3.6% Erysipelotrichaceae; 3.1% Corynebacterium; 3.1% Cellulomonas; 2.3% Aerococcus; 2% Acidovorax; 1.9% Lachnospiraceae; 1.6% Sphingobium
UR6Enterococcus faecalis4.9351.4% Enterococcus; 46.5% Enterococcaceae
UR7Enterobacter cloaceae ESBL1.8498% Enterobacter; 0.9% Proteus
UR8Citrobacter koseri15.9457.5% Citrobacter koseri; 4.5% Bacteroides; 3.7% Dysgonomonas; 2.7% Bacteroides; 2.6% Rikenellaceae; 2.3% Parabacteroides; 2% Desulfovibrionaceae; 2% Lachnospiraceae; 2% Ruminococcaceae; 1.9% Enterobacteriaceae; 1.3% Ruminococcus; 1.3% Erysipelotrichaceae; 1.2% Enterococcus; 1.1% Clostridiales
UR9Proteus mirabilis0.4596.7% Proteus; 2.4% Enterobacteriaceae; 1.2% Prevotella
UR10Proteus mirabilis3.6697% Proteus; 1.3% Enterobacteriaceae
UR11Escherichia coli; Proteus mirabilis ESBL9.3993% Enterobacteriaceae; 3.5% Proteus
UR12Proteus mirabilis1.7399.2% Proteus
UR13Enterobacter aerogenes1.0875.4% Enterobacteriaceae; 14% Lactobacillus delbrueckii; 4.2% Kluyvera; 4% Enterobacter; 1% Lactobacillus helveticus
UR14Enterobacter cloacae4.1495.4% Enterobacteriaceae; 1.2% Clostridium perfringens; 1% Bifidobacterium pseudolongum
UR15Enterobacter cloacae; Enterococcus faecalis; E coli; Proteus mirabilis15.1786.9% Proteus; 7.2% Enterobacteriaceae; 2..2% Enterobacter; 1% Rhodospirillaceae
UR16Escherichia coli; Klebsiella pneumoniae15..0491.2% Enterobacteriaceae; 8.6% Klebsiella