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Table 1 Identification results based on conventional urine culture and 16S rRNA gene sequencing

From: Identification of pathogens from native urine samples by MALDI-TOF/TOF tandem mass spectrometry

N.o. Urine culture identification DNA concentration (ng/μL) 16S rRNA sequencing results
UR1 Klebsiella pneumoniae ESBL 3.15 100% Enterobacteriaceae
UR2 Klebsiella oxytoca 9.14 97% Enterobacteriaceae
UR3 Klebsiella pneumoniae ESBL 6.01 90% Enterobacteriaceae; 5.1% Granulicatella; 1.1% Anaerococcus
UR4 Proteus mirabilis 6.96 97.7% Proteus; 1% Enterobacteriaceae
UR5 Enterococcus faecalis 16.22 21.8% Pseudomonas; 13.7% Propionibacterium acnes; 11% Lactobacillus helveticus; 8.1% Adhaeribacter; 8% Acinetobacter; 5.9% Staphylococcus; 4.9% Stenotrophomonas; 3.8% Hydrogenophaga; 3.6% Erysipelotrichaceae; 3.1% Corynebacterium; 3.1% Cellulomonas; 2.3% Aerococcus; 2% Acidovorax; 1.9% Lachnospiraceae; 1.6% Sphingobium
UR6 Enterococcus faecalis 4.93 51.4% Enterococcus; 46.5% Enterococcaceae
UR7 Enterobacter cloaceae ESBL 1.84 98% Enterobacter; 0.9% Proteus
UR8 Citrobacter koseri 15.94 57.5% Citrobacter koseri; 4.5% Bacteroides; 3.7% Dysgonomonas; 2.7% Bacteroides; 2.6% Rikenellaceae; 2.3% Parabacteroides; 2% Desulfovibrionaceae; 2% Lachnospiraceae; 2% Ruminococcaceae; 1.9% Enterobacteriaceae; 1.3% Ruminococcus; 1.3% Erysipelotrichaceae; 1.2% Enterococcus; 1.1% Clostridiales
UR9 Proteus mirabilis 0.45 96.7% Proteus; 2.4% Enterobacteriaceae; 1.2% Prevotella
UR10 Proteus mirabilis 3.66 97% Proteus; 1.3% Enterobacteriaceae
UR11 Escherichia coli; Proteus mirabilis ESBL 9.39 93% Enterobacteriaceae; 3.5% Proteus
UR12 Proteus mirabilis 1.73 99.2% Proteus
UR13 Enterobacter aerogenes 1.08 75.4% Enterobacteriaceae; 14% Lactobacillus delbrueckii; 4.2% Kluyvera; 4% Enterobacter; 1% Lactobacillus helveticus
UR14 Enterobacter cloacae 4.14 95.4% Enterobacteriaceae; 1.2% Clostridium perfringens; 1% Bifidobacterium pseudolongum
UR15 Enterobacter cloacae; Enterococcus faecalis; E coli; Proteus mirabilis 15.17 86.9% Proteus; 7.2% Enterobacteriaceae; 2..2% Enterobacter; 1% Rhodospirillaceae
UR16 Escherichia coli; Klebsiella pneumoniae 15..04 91.2% Enterobacteriaceae; 8.6% Klebsiella