Skip to main content

Table 6 Student’s t-test analysis of tear proteome from patients diagnosed with ocular GVHD versus control

From: Tear proteomic profile in three distinct ocular surface diseases: keratoconus, pterygium, and dry eye related to graft-versus-host disease

Gene name

Protein

p-value

FDR 5%

FDR 1%

FWER

Control average LFQ log transformed

GVHD average LFQ log transformed

SE of difference

TKT

Transketolase

2.75E−05

Y

Y

Y

21.2

25.4

0.6

DEFA1; DEFA3

Neutrophil defensin 1; HP 1–56; Neutrophil defensin 2; Neutrophil defensin 3; HP 3–56; Neutrophil defensin 2

3.90E−05

Y

Y

Y

24.7

30.1

0.9

KRT13§

Keratin, type I cytoskeletal 13

5.89E−05

Y

Y

Y

25.8

30.1

0.8

KRT4

Keratin, type II cytoskeletal 4

6.68E−04

Y

N

N

25.5

28.9

0.8

KRT5

Keratin, type II cytoskeletal 5

7.04E−04

Y

N

N

26.2

29.2

0.7

SAA4

Serum amyloid A-4 protein

1.49E−03

Y

N

N

22.6

23.9

0.3

CASP14

Caspase-14; Caspase-14 subunit p19; Caspase-14 subunit p10

2.43E−03

Y

N

N

22.2

25.2

0.7

ANXA1

Annexin A1; Annexin

2.47E−03

Y

N

N

24.8

27.1

0.6

KRT19

Keratin, type I cytoskeletal 19

2.48E−03

Y

N

N

25.6

28.5

0.8

A2M

Alpha-2-macroglobulin

2.89E−03

Y

N

N

26.1

29.0

0.8

CFB

Complement factor B; Complement factor B Ba fragment; Complement factor B Bb fragment

3.20E−03

Y

N

N

24.2

26.9

0.7

KRT6A; KRT6C

Keratin, type II cytoskeletal 6A; Keratin, type II cytoskeletal 6C

3.74E−03

Y

N

N

28.1

30.6

0.7

SPRR3

Small proline-rich protein 3

4.04E−03

Y

N

N

22.3

24.9

0.7

PLG

Plasminogen

4.67E−03

Y

N

N

22.7

24.7

0.5

IGHM

Ig mu chain C region; Ig mu heavy chain disease protein

4.86E−03

Y

N

N

26.3

28.2

0.6

ANXA2; ANXA2P2

Annexin A2; Annexin; Putative annexin A2-like protein

5.22E−03

Y

N

N

25.1

27.7

0.8

HRG

Histidine-rich glycoprotein

5.85E−03

Y

N

N

21.7

23.8

0.6

H2AFX#

Histone H2AX

6.76E−03

N

N

N

22.0

24.4

0.7

FLG

Filaggrin

6.93E−03

N

N

N

21.8

25.7

1.2

MYL6

Myosin light polypeptide 6

8.11E−03

N

N

N

21.9

24.0

0.7

IGHG3

Ig gamma-3 chain C region

9.38E−03

N

N

N

27.4

29.8

0.8

CTSG

Cathepsin G

9.40E−03

N

N

N

20.3

24.6

1.3

HIST1H4A

Histone H4

1.00E−02

N

N

N

23.2

25.2

0.6

CFH

Complement factor H

1.22E−02

N

N

N

24.2

26.4

0.7

YWHAZ

14–3-3 protein zeta/delta

1.25E−02

N

N

N

24.7

26.6

0.6

EZR

Ezrin

1.80E−02

N

N

N

24.6

25.9

0.5

HSPA8

Heat shock cognate 71 kDa protein

1.94E−02

N

N

N

23.2

25.0

0.7

ACTN4

Alpha-actinin-4

1.98E−02

N

N

N

22.6

25.0

0.9

LRG1

Leucine-rich alpha-2-glycoprotein

2.05E−02

N

N

N

21.9

23.2

0.5

S100A14

Protein S100-A14

2.09E−02

N

N

N

19.5

21.7

0.8

KRT14

Keratin, type I cytoskeletal 14

2.30E−02

N

N

N

24.8

27.8

1.1

C4BPA

C4b-binding protein alpha chain

2.41E−02

N

N

N

21.6

23.7

0.8

TF

Serotransferrin

2.41E−02

N

N

N

28.3

30.9

1.0

YWHAB

14–3-3 protein beta/alpha; 14–3-3 protein beta/alpha, N-terminally processed

2.51E−02

N

N

N

23.7

25.3

0.6

ITIH1

Inter-alpha-trypsin inhibitor heavy chain H1

2.58E−02

N

N

N

21.8

22.9

0.4

C3Φ

Complement C3

2.61E−02

N

N

N

27.6

29.2

0.6

TFF1

Trefoil factor 1

2.65E−02

N

N

N

22.9

25.8

1.1

ALB

Serum albumin

2.82E−02

N

N

N

33.5

35.3

0.7

ACTB

Actin, cytoplasmic 1; Actin, cytoplasmic 1, N-terminally processed

3.14E−02

N

N

N

27.3

29.0

0.7

CFL1

Cofilin-1

3.62E−02

N

N

N

21.9

24.0

0.9

KNG1

Kininogen-1

4.37E−02

N

N

N

23.8

25.3

0.7

S100A9

Protein S100-A9

4.40E−02

N

N

N

24.6

26.6

0.9

UPK3BL; POLR2J3

Uroplakin-3b-like protein

4.44E−02

N

N

N

21.9

23.0

0.5

TXN

Thioredoxin

4.96E−02

N

N

N

22.9

24.7

0.8

  1. Proteins with increased abundance in GVHD in comparison with controls are shown
  2. FDR: false discovery rate. FEWR: family-wise error rate (Holm-Sidak method). Y: yes, still significant after multiple comparisons correction. N: no, not significant after multiple comparisons correction. SE: standard error. § keratin cluster (P13646-1; K7EQH6; P35900; P35900; K7EMJ2; A0A140TA69; Q8IUT8; O76011; Q6IFU5; Q6A162; O76009; Q6NTB9; O76009; A0A140TA62; O76011; G3V1C2; J3QR55). # histone cluster (H2AFX; HIST1H2AA; HIST1H2AB; HIST1H2AG; HIST1H2AD; HIST2H2AA3; HIST3H2A; HIST1H2AC; HIST2H2AC; H2AFJ; HIST1H2AH; HIST1H2AJ; HIST2H2AB; H2AFZ; H2AFV). Φ complement cluster (P01024; Q2UVX4; M0QXZ3; M0QYC8; M0R0Q9)