Table 3 List of novel exons identified using peptide evidence in C. neoformans var. grubii

1

CNAG_02122

AcALLEGLESGLSR

Chr 6: 1136454 – 1136507; Negative

GenBank: JZ152661.1 (CNAG_02122_NE1)

XP_571070.1 (Cryptococcus neoformans var. neoformans JEC21); XP_003194441.1 (Cryptococcus gattii WM276); EIW67330.1 (Tremella mesenterica DSM 1558)

2

CNAG_02773

TAITIKPALAAQAGK

Chr 3: 801827 – 801913; Negative

GenBank: JZ152662.1 (CNAG_02773_NE2)

XP_003192989.1 (Cryptococcus gattii WM276); XP_570007.1 (Cryptococcus neoformans var. neoformans JEC21)

3

CNAG_03648

VIFVDADQIVR

Chr 2: 438306 – 438539; Positive

GenBank: JZ152663.1 (CNAG_03648_NE3)

XP_777193.1 (Cryptococcus neoformans var. neoformans B-3501A); XP_388116.1 (Gibberella zeae PH-1); XP_001832620.2 (Coprinopsis cinerea okayama 7#130);

4

CNAG_03920

YYDLGMESR

Chr 2: 1190442 – 1190507; Positive

GenBank: JZ152664.1 (CNAG_03920_NE4)

XP_569234.1 (Cryptococcus neoformans var. neoformans JEC21); XP_003191314.1 (Cryptococcus gattii WM276)

5

CNAG_06526

TYPLALDLWDSGSSVIIR; IASFPLNFISR

Chr 7: 12832–13094; Positive

GenBank: JZ152665.1 (CNAG_06526_NE5)

XP_567229.1 (Cryptococcus neoformans var. neoformans JEC21)

6

CNAG_06533

SNGYYSPITYFLAK; LLFDIIPLR

Chr 7: 36868 – 37134; Positive

GenBank: JZ152666.1 (CNAG_06533_NE6)

XP_571629.1 (Cryptococcus neoformans var. neoformans JEC21); XP_003194552.1 (Cryptococcus gattii WM276); XP_757847.1 (Ustilago maydis 521); XP_750621.1 (Aspergillus fumigatus Af293)

7

CNAG_02396

FNGPVDFER

Chr 6: 435584 – 435658; Positive

GenBank: JZ152667.1 (CNAG_02396_NE7)

XP_570777.1 (Cryptococcus neoformans var. neoformans JEC21); XP_003194186.1 (Cryptococcus gattii WM276)

8

CNAG_00853

TERYPLTLGR

Chr 1: 2257775 – 2257895; Positive

-

XP_567069.1(Cryptococcus neoformans var. neoformans JEC21), XP_777691.1 (Cryptococcus neoformans var. neoformans B-3501A), XP_003191768.1 (Cryptococcus gattii WM276)

9

CNAG_07863

AELEMLVQR

Chr 10: 1004163 – 1004219; Negative

-

XP_567270.1 (Cryptococcus neoformans var. neoformans JEC21), XP_773061.1 (Cryptococcus neoformans var. neoformans B-3501A), XP_003193980.1 (Cryptococcus gattii WM276)

10

CNAG_01261

VTGQSPEDEDWLVGETLDGSHAGGFPK

Chr 5: 763635 – 763722; Negative

-

XP_570166.1 (Cryptococcus neoformans var. neoformans JEC21)

11

CNAG_02407

GGASIFEMVR; GGASIFEmVR

Chr 6: 401719 – 401783; Negative

-

XP_775427.1 (Cryptococcus neoformans var. neoformans B-3501A);

12

CNAG_02292

YDIDLENKR

Chr 6: 684574 – 684630; Positive

-

XP_775540.1 (Cryptococcus neoformans var. neoformans B-3501A);

13

CNAG_02230

FIDPAESGAVIPILHVNGYK

Chr 6: 853119 – 853178; Negative

-

XP_003194389.1 (Cryptococcus gattii WM276); XP_775249.1 (Cryptococcus neoformans var. neoformans B-3501A); XP_570860.1 (Cryptococcus neoformans var. neoformans JEC21)

14

CNAG_02147

LLLRPIWKPR

Chr 6: 1080395 – 1080490; Positive

-

XP_775114.1 (Cryptococcus neoformans var. neoformans B-3501A)

15

CNAG_03648

ASSVVTAAYKPLDGEGIFAPAQSTR

Chr 2: 436700–436837; Positive

-

XP_568822.1 (Cryptococcus neoformans var. neoformans JEC21);XP_003192380.1 (Cryptococcus gattii WM276)

16

CNAG_04955

GAVLVNVGR

Chr 4: 73400–73459; Negative

-

XP_568183.1 (Cryptococcus neoformans var. neoformans JEC21); XP_773659.1 (Cryptococcus neoformans var. neoformans B-3501A); XP_003193297.1 (Cryptococcus gattii WM276)

17

CNAG_05059

GLLDKFGEDR

Chr 4: 323430–323477; Positive

-

XP_568096.1 (Cryptococcus neoformans var. neoformans JEC21); EIW71449.1 (Tremella mesenterica DSM 1558)