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Table 3 List of novel exons identified using peptide evidence in C. neoformans var. grubii

From: Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry

  Gene ID Genome search specific peptide Novel exon co – ordinates GenBank Accession (Transcript identifier) Orthologous evidence for novel exons identified by GSSPs
1 CNAG_02122 AcALLEGLESGLSR Chr 6: 1136454 – 1136507; Negative GenBank: JZ152661.1 (CNAG_02122_NE1) XP_571070.1 (Cryptococcus neoformans var. neoformans JEC21); XP_003194441.1 (Cryptococcus gattii WM276); EIW67330.1 (Tremella mesenterica DSM 1558)
2 CNAG_02773 TAITIKPALAAQAGK Chr 3: 801827 – 801913; Negative GenBank: JZ152662.1 (CNAG_02773_NE2) XP_003192989.1 (Cryptococcus gattii WM276); XP_570007.1 (Cryptococcus neoformans var. neoformans JEC21)
3 CNAG_03648 VIFVDADQIVR Chr 2: 438306 – 438539; Positive GenBank: JZ152663.1 (CNAG_03648_NE3) XP_777193.1 (Cryptococcus neoformans var. neoformans B-3501A); XP_388116.1 (Gibberella zeae PH-1); XP_001832620.2 (Coprinopsis cinerea okayama 7#130);
4 CNAG_03920 YYDLGMESR Chr 2: 1190442 – 1190507; Positive GenBank: JZ152664.1 (CNAG_03920_NE4) XP_569234.1 (Cryptococcus neoformans var. neoformans JEC21); XP_003191314.1 (Cryptococcus gattii WM276)
5 CNAG_06526 TYPLALDLWDSGSSVIIR; IASFPLNFISR Chr 7: 12832–13094; Positive GenBank: JZ152665.1 (CNAG_06526_NE5) XP_567229.1 (Cryptococcus neoformans var. neoformans JEC21)
6 CNAG_06533 SNGYYSPITYFLAK; LLFDIIPLR Chr 7: 36868 – 37134; Positive GenBank: JZ152666.1 (CNAG_06533_NE6) XP_571629.1 (Cryptococcus neoformans var. neoformans JEC21); XP_003194552.1 (Cryptococcus gattii WM276); XP_757847.1 (Ustilago maydis 521); XP_750621.1 (Aspergillus fumigatus Af293)
7 CNAG_02396 FNGPVDFER Chr 6: 435584 – 435658; Positive GenBank: JZ152667.1 (CNAG_02396_NE7) XP_570777.1 (Cryptococcus neoformans var. neoformans JEC21); XP_003194186.1 (Cryptococcus gattii WM276)
8 CNAG_00853 TERYPLTLGR Chr 1: 2257775 – 2257895; Positive - XP_567069.1(Cryptococcus neoformans var. neoformans JEC21), XP_777691.1 (Cryptococcus neoformans var. neoformans B-3501A), XP_003191768.1 (Cryptococcus gattii WM276)
9 CNAG_07863 AELEMLVQR Chr 10: 1004163 – 1004219; Negative - XP_567270.1 (Cryptococcus neoformans var. neoformans JEC21), XP_773061.1 (Cryptococcus neoformans var. neoformans B-3501A), XP_003193980.1 (Cryptococcus gattii WM276)
10 CNAG_01261 VTGQSPEDEDWLVGETLDGSHAGGFPK Chr 5: 763635 – 763722; Negative - XP_570166.1 (Cryptococcus neoformans var. neoformans JEC21)
11 CNAG_02407 GGASIFEMVR; GGASIFEmVR Chr 6: 401719 – 401783; Negative - XP_775427.1 (Cryptococcus neoformans var. neoformans B-3501A);
12 CNAG_02292 YDIDLENKR Chr 6: 684574 – 684630; Positive - XP_775540.1 (Cryptococcus neoformans var. neoformans B-3501A);
13 CNAG_02230 FIDPAESGAVIPILHVNGYK Chr 6: 853119 – 853178; Negative - XP_003194389.1 (Cryptococcus gattii WM276); XP_775249.1 (Cryptococcus neoformans var. neoformans B-3501A); XP_570860.1 (Cryptococcus neoformans var. neoformans JEC21)
14 CNAG_02147 LLLRPIWKPR Chr 6: 1080395 – 1080490; Positive - XP_775114.1 (Cryptococcus neoformans var. neoformans B-3501A)
15 CNAG_03648 ASSVVTAAYKPLDGEGIFAPAQSTR Chr 2: 436700–436837; Positive - XP_568822.1 (Cryptococcus neoformans var. neoformans JEC21);XP_003192380.1 (Cryptococcus gattii WM276)
16 CNAG_04955 GAVLVNVGR Chr 4: 73400–73459; Negative - XP_568183.1 (Cryptococcus neoformans var. neoformans JEC21); XP_773659.1 (Cryptococcus neoformans var. neoformans B-3501A); XP_003193297.1 (Cryptococcus gattii WM276)
17 CNAG_05059 GLLDKFGEDR Chr 4: 323430–323477; Positive - XP_568096.1 (Cryptococcus neoformans var. neoformans JEC21); EIW71449.1 (Tremella mesenterica DSM 1558)