The plasma peptidome

Table 1 The number of mgf files with MS/MS spectra > E4 counts search against the human proteins by X!TANDEM and SEQUEST

Treatment ID#	MGF file count	TreatmentName
1	115	Alzheimer control
2	115	AlzHeimer control STYP
3	120	AlzHeimer
4	120	Alzheimer STYP
5	89	Cancer breast
6	89	Cancer breast STYP
7	50	Cancer control
8	50	Cancer control STYP
9	90	Cancer ovarian
10	90	Cancer ovarian STYP
11	12	Ice cold control
12	12	Ice cold control STYP
13	211	Heart attack arterial
14	211	Heart attack arterial STYP
15	267	Heart attack venous control
16	267	Heart attack venous control STYP
17	121	Heart attack venous
18	121	Heart attack venous STYP
19	121	Multiple sclerosis control
20	121	Multiple sclerosis control STYP
21	122	Multiple sclerosis
22	122	Multiple sclerosis STYP
23	100	Sepsis
24	100	Sepsis STYP
25	90	Sepsis control
26	90	Sepsis control STYP
LCMS runs searched	1508	Fully Tryptic
LCMS runs searched	1508	Phospho Tryptic STYP

A total of 1508 mgf files with high intensity spectra greater than E4 counts were searched both as fully tryptic and phospho tryptic peptides and the results compared as separate treatments

ISSN: 1559-0275